ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems. IEEE Transactions on Parallel and Distributed Systems, 17(8): 740-749.īioinformatics. “ ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis“, ScalaBLAST supports all 5 primary program types (blastn, blastp, tblastn, tblastx, and blastx) and several output formats (pairwise, tabular, or XML).Ĭomputational Biology & Bioinformatics ,Pacific Northwest National Laboratory ScalaBLAST is a high-performance multiprocessor implementation of the NCBI BLAST library. Not updated since 2002, but still popular. Se-Al - An older sequence alignment editor for Mac OS X. Not the most user-friendly package, steep learning curve. Staden Package - a powerful open source sequence assembly and editing package for UNIX, Linux, Windows, and Mac OS X. Posted on 0 0 Categories Alignment / BLAST Tags Alignment / BLAST, Protein Sequence, SAPS, Segment Pair, SSPA, Statistical Analysis Leave a comment on SAPS/SSPA 20110801 – Statistical Analysis of Protein Sequences & Significant Segment Pair Alignment secureBlast 1.03 – Controlled access to wwwBLAST BioEdit - a very popular free sequence alignment editor for Windows. (1995)īacterial classifications derived from RecA protein sequence comparisons. Methods and algorithms for statistical analysis of protein sequences. SSPA is an acronym for Significant Segment Pair Alignment.īrendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E.
SAPS (statistical analysis of protein sequences) calculates all the statistics for any individual protein sequence input.
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